Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_04385 | Not Available | Positive | 897365 - 897733 | 13962.6 |
| heme-binding protein | FAP39_04390 | Not Available | Positive | 897730 - 898227 | 17382.6 |
| helix-turn-helix transcriptional regulator | FAP39_04395 | Not Available | Positive | 898284 - 898622 | 12695.3 |
| yeee/yede family protein | FAP39_04400 | Not Available | Positive | 898698 - 899756 | 36609.5 |
| 3-methyladenine dna glycosylase | FAP39_04405 | Not Available | Positive | 899805 - 900467 | 24461.3 |
| cytochrome c | FAP39_04410 | Not Available | Negative | 900464 - 900805 | 11919.9 |
| c-type cytochrome | FAP39_04415 | Not Available | Negative | 900868 - 901263 | 13771.6 |
| cytochrome c | FAP39_04420 | Not Available | Negative | 901300 - 901662 | 12833.2 |
| paai family thioesterase | FAP39_04425 | Not Available | Positive | 901823 - 902239 | 14514.7 |
| abc transporter atp-binding protein | FAP39_04430 | Not Available | Negative | 902271 - 902954 | 24158.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
