Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-type cytochrome | FAP39_04335 | Not Available | Negative | 888590 - 889300 | 26552.8 |
| c-type cytochrome | FAP39_04340 | Not Available | Negative | 889304 - 890359 | 37505.1 |
| sulfite dehydrogenase | FAP39_04345 | Not Available | Negative | 890343 - 891608 | 46312.4 |
| thiosulfohydrolase soxb | FAP39_04350 | Not Available | Negative | 891692 - 893389 | 62645.2 |
| sulfur oxidation c-type cytochrome soxa | FAP39_04355 | Not Available | Negative | 893504 - 894352 | 30851.4 |
| thiosulfate oxidation carrier complex protein soxz | FAP39_04360 | Not Available | Negative | 894426 - 894755 | 12020.3 |
| thiosulfate oxidation carrier protein soxy | FAP39_04365 | Not Available | Negative | 894775 - 895206 | 13900.6 |
| sulfur oxidation c-type cytochrome soxx | FAP39_04370 | Not Available | Negative | 895238 - 895711 | 16229.3 |
| duf255 domain-containing protein | FAP39_04375 | Not Available | Negative | 895893 - 896471 | 21660.8 |
| cytochrome c biogenesis protein ccda | FAP39_04380 | Not Available | Negative | 896557 - 897294 | 26070.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
