Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pas domain-containing protein | FAP39_04285 | Not Available | Positive | 880372 - 880914 | 20678.0 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | FAP39_04290 | Not Available | Positive | 881090 - 881581 | 16827.1 |
| acetyl-coa carboxylase biotin carboxylase subunit | FAP39_04295 | Not Available | Positive | 881591 - 882943 | 48783.2 |
| leucyl/phenylalanyl-trna--protein transferase | FAP39_04300 | Not Available | Positive | 882943 - 883605 | 24429.1 |
| duf2155 domain-containing protein | FAP39_04305 | Not Available | Negative | 883569 - 883940 | 13357.6 |
| outer membrane lipid asymmetry maintenance protein mlad | FAP39_04310 | Not Available | Negative | 884042 - 884491 | 15261.2 |
| nadh:ubiquinone oxidoreductase subunit ndufa12 | FAP39_04315 | Not Available | Negative | 884509 - 884892 | 14795.2 |
| atp-dependent clp protease atp-binding subunit clpx | FAP39_04320 | Not Available | Negative | 885010 - 886278 | 45821.9 |
| atp-dependent clp protease proteolytic subunit | FAP39_04325 | Not Available | Negative | 886418 - 887050 | 23202.9 |
| nad(p)/fad-dependent oxidoreductase | FAP39_04330 | Not Available | Negative | 887291 - 888559 | 44586.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
