Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit 3 | FAP39_04235 | Not Available | Negative | 868065 - 868868 | 30200.0 |
| cytochrome c oxidase assembly protein | FAP39_04240 | Not Available | Negative | 868904 - 869479 | 21516.5 |
| protoheme ix farnesyltransferase | FAP39_04245 | Not Available | Negative | 869643 - 870581 | 33902.0 |
| cytochrome c oxidase subunit ii | FAP39_04250 | Not Available | Negative | 870662 - 871501 | 30977.6 |
| metalloprotease tldd | FAP39_04255 | Not Available | Positive | 871685 - 873106 | 49630.7 |
| dna-protecting protein dpra | FAP39_04260 | Not Available | Positive | 873228 - 874370 | 40075.2 |
| type i dna topoisomerase | FAP39_04265 | Not Available | Positive | 874518 - 877109 | 95976.2 |
| coa transferase subunit a | FAP39_04270 | Not Available | Positive | 877331 - 878047 | 25733.9 |
| coa transferase subunit b | FAP39_04275 | Not Available | Positive | 878060 - 878689 | 22042.7 |
| long-chain fatty acid--coa ligase | FAP39_04280 | Not Available | Negative | 878756 - 880255 | 54375.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
