Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division protein ftsl | FAP39_04135 | Not Available | Negative | 848441 - 848785 | 12863.3 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | FAP39_04140 | Not Available | Negative | 848785 - 849777 | 35819.9 |
| division/cell wall cluster transcriptional repressor mraz | FAP39_04145 | Not Available | Negative | 849781 - 850284 | 19276.6 |
| nudix hydrolase | FAP39_04150 | Not Available | Positive | 851086 - 851568 | 18332.5 |
| duf1178 family protein | FAP39_04155 | Not Available | Positive | 851651 - 852106 | 16202.1 |
| sdr family nad(p)-dependent oxidoreductase | FAP39_04160 | Not Available | Positive | 852118 - 852762 | 22934.0 |
| aspartate kinase | FAP39_04165 | Not Available | Positive | 852896 - 854134 | 44437.6 |
| phosphoenolpyruvate--protein phosphotransferase | FAP39_04170 | Not Available | Positive | 854196 - 856439 | 81906.3 |
| protein ecsc | FAP39_04175 | Not Available | Negative | 856444 - 857220 | 27088.6 |
| n-acetyltransferase | FAP39_04180 | Not Available | Negative | 857252 - 857788 | 19515.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
