Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2484 family protein | FAP39_04085 | Not Available | Negative | 835697 - 835951 | 9405.93 |
| udp-n-acetylmuramate--l-alanine ligase | FAP39_04090 | Not Available | Negative | 836030 - 837424 | 49618.1 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | FAP39_04095 | Not Available | Negative | 837426 - 838523 | 38617.7 |
| cell division protein ftsw | FAP39_04100 | Not Available | Negative | 838520 - 839686 | 42140.7 |
| nad(p)/fad-dependent oxidoreductase | FAP39_04105 | Not Available | Positive | 839883 - 841067 | 42210.4 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | FAP39_04110 | Not Available | Negative | 841059 - 842465 | 49056.3 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | FAP39_04115 | Not Available | Negative | 842624 - 843706 | 39036.6 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | FAP39_04120 | Not Available | Negative | 843707 - 845149 | 49922.6 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | FAP39_04125 | Not Available | Negative | 845146 - 846639 | 52015.6 |
| penicillin-binding protein 2 | FAP39_04130 | Not Available | Negative | 846660 - 848444 | 64414.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
