Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thiamine phosphate synthase | FAP39_00020 | Not Available | - | 2893 - 3483 | 21683.1 |
| 16s ribosomal rna | Not Available | Not Available | + | 4078 - 5550 | Not Available |
| thiazole synthase | FAP39_00025 | Not Available | - | 3483 - 4250 | 26827.4 |
| sulfur carrier protein this | FAP39_00030 | Not Available | - | 4252 - 4449 | 6837.25 |
| fad-dependent oxidoreductase | FAP39_00035 | Not Available | - | 4418 - 5386 | 35027.1 |
| phosphomethylpyrimidine synthase thic | FAP39_00040 | Not Available | - | 5383 - 7182 | 66733.6 |
| abc transporter atp-binding protein | FAP39_00045 | Not Available | + | 7727 - 8656 | 34149.4 |
| abc transporter permease | FAP39_00050 | Not Available | + | 8653 - 9414 | 27578.7 |
| s49 family peptidase | FAP39_00055 | Not Available | + | 9578 - 10375 | 28836.9 |
| calcium/sodium antiporter | FAP39_00060 | Not Available | + | 10548 - 11498 | 33660.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.