Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chloride channel protein | FAP39_04035 | Not Available | Negative | 823725 - 825413 | 59592.8 |
| dna repair protein recn | FAP39_04040 | Not Available | Negative | 825510 - 827156 | 58892.2 |
| outer membrane protein assembly factor bamd | FAP39_04045 | Not Available | Negative | 827191 - 828045 | 32534.0 |
| udp-3-o-acyl-n-acetylglucosamine deacetylase | FAP39_04050 | Not Available | Negative | 828156 - 829076 | 32699.2 |
| cell division protein ftsz | FAP39_04055 | Not Available | Negative | 829285 - 830907 | 57644.1 |
| cell division protein ftsa | FAP39_04060 | Not Available | Negative | 831253 - 832587 | 48264.1 |
| ftsq-type potra domain-containing protein | FAP39_04065 | Not Available | Negative | 832584 - 833459 | 33042.2 |
| d-alanine--d-alanine ligase | FAP39_04070 | Not Available | Negative | 833447 - 834361 | 32850.1 |
| udp-n-acetylmuramate dehydrogenase | FAP39_04075 | Not Available | Negative | 834446 - 835372 | 32547.8 |
| duf2484 family protein | FAP39_04080 | Not Available | Negative | 835443 - 835700 | 9946.72 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
