Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioesterase | FAP39_03985 | Not Available | Positive | 813780 - 814265 | 18383.9 |
| hypothetical protein | FAP39_03990 | Not Available | Positive | 814346 - 814864 | 19029.3 |
| bola family transcriptional regulator | FAP39_03995 | Not Available | Negative | 814866 - 815123 | 9180.81 |
| j domain-containing protein | FAP39_04000 | Not Available | Positive | 815197 - 815820 | 23739.9 |
| hypothetical protein | FAP39_04005 | Not Available | Negative | 815877 - 817559 | 61915.3 |
| peptide-methionine (r)-s-oxide reductase msrb | FAP39_04010 | Not Available | Negative | 817639 - 818115 | 17749.2 |
| cobaltochelatase subunit cobs | FAP39_04015 | Not Available | Positive | 818314 - 819300 | 36852.8 |
| cobaltochelatase subunit cobt | FAP39_04020 | Not Available | Positive | 819453 - 821327 | 69218.1 |
| aminopeptidase p family protein | FAP39_04025 | Not Available | Positive | 821445 - 823244 | 65910.3 |
| duf427 domain-containing protein | FAP39_04030 | Not Available | Positive | 823323 - 823667 | 12564.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
