Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | FAP39_03935 | Not Available | Positive | 801541 - 802293 | 26205.8 |
| mmcq/yjbr family dna-binding protein | FAP39_03940 | Not Available | Positive | 802299 - 802676 | 13920.7 |
| alkylhydroperoxidase | FAP39_03945 | Not Available | Negative | 802746 - 803318 | 21488.8 |
| tetr family transcriptional regulator | FAP39_03950 | Not Available | Negative | 803381 - 804031 | 24796.5 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | FAP39_03955 | Not Available | Negative | 804220 - 804999 | 28053.3 |
| heme-binding protein | FAP39_03960 | Not Available | Negative | 805062 - 805490 | 14622.8 |
| malate synthase g | FAP39_03965 | Not Available | Negative | 805572 - 807704 | 76525.5 |
| aminopeptidase n | FAP39_03970 | Not Available | Positive | 807929 - 810505 | 95054.7 |
| hypothetical protein | FAP39_03975 | Not Available | Positive | 810737 - 812044 | 49288.1 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatb | FAP39_03980 | Not Available | Positive | 812119 - 813630 | 55524.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
