Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide abc transporter substrate-binding protein | FAP39_03885 | Not Available | Positive | 789789 - 791489 | 61987.9 |
| abc transporter permease | FAP39_03890 | Not Available | Positive | 791562 - 792569 | 37375.7 |
| abc transporter permease | FAP39_03895 | Not Available | Positive | 792535 - 793512 | 35507.3 |
| yeee/yede family protein | FAP39_03900 | Not Available | Positive | 793710 - 794771 | 36100.3 |
| duf3422 domain-containing protein | FAP39_03905 | Not Available | Negative | 794707 - 795987 | 47519.2 |
| nad(p)(+) transhydrogenase (re/si-specific) subunit beta | FAP39_03910 | Not Available | Negative | 796241 - 797674 | 49881.5 |
| re/si-specific nad(p)(+) transhydrogenase subunit alpha | FAP39_03915 | Not Available | Negative | 797688 - 799259 | 55561.4 |
| isoprenylcysteine carboxylmethyltransferase family protein | FAP39_03920 | Not Available | Negative | 799391 - 799843 | 17327.6 |
| rhodanese-like domain-containing protein | FAP39_03925 | Not Available | Negative | 799840 - 800259 | 15308.3 |
| mbl fold metallo-hydrolase | FAP39_03930 | Not Available | Negative | 800450 - 801403 | 35223.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
