Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | FAP39_03835 | Not Available | Negative | 777565 - 778758 | 43745.5 |
| had family hydrolase | FAP39_03840 | Not Available | Negative | 778820 - 779491 | 23754.4 |
| bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmu | FAP39_03845 | Not Available | Positive | 779670 - 781025 | 47636.1 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | FAP39_03850 | Not Available | Positive | 781025 - 782848 | 65415.8 |
| dna alkylation repair protein | FAP39_03855 | Not Available | Positive | 782845 - 783531 | 25818.5 |
| hypothetical protein | FAP39_03860 | Not Available | Negative | 783528 - 783962 | 14606.9 |
| gtp 3',8-cyclase moaa | FAP39_03865 | Not Available | Positive | 784017 - 785021 | 37934.6 |
| 3-deoxy-d-manno-octulosonic acid transferase | FAP39_03870 | Not Available | Positive | 785021 - 786310 | 47162.7 |
| acetylornithine deacetylase | FAP39_03875 | Not Available | Negative | 786307 - 787488 | 42736.9 |
| abc transporter atp-binding protein | FAP39_03880 | Not Available | Negative | 787682 - 789517 | 67142.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
