Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxymethylglutaryl-coa lyase | FAP39_03785 | Not Available | Negative | 767263 - 768120 | 29616.3 |
| glutathione s-transferase | FAP39_03790 | Not Available | Negative | 768113 - 768778 | 24982.2 |
| glutathione s-transferase family protein | FAP39_03795 | Not Available | Negative | 768788 - 769447 | 24519.6 |
| acetyl/propionyl/methylcrotonyl-coa carboxylase subunit alpha | FAP39_03800 | Not Available | Negative | 769444 - 771399 | 68636.5 |
| hypothetical protein | FAP39_03805 | Not Available | Negative | 771392 - 771997 | 21290.6 |
| methylcrotonoyl-coa carboxylase | FAP39_03810 | Not Available | Negative | 772030 - 773637 | 57630.6 |
| duf1311 domain-containing protein | FAP39_03815 | Not Available | Negative | 773658 - 774167 | 18157.4 |
| ompw family protein | FAP39_03820 | Not Available | Positive | 774302 - 774904 | 21414.2 |
| isovaleryl-coa dehydrogenase | FAP39_03825 | Not Available | Negative | 774991 - 776154 | 42511.1 |
| apc family permease | FAP39_03830 | Not Available | Positive | 776258 - 777547 | 45486.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
