Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_03735 | Not Available | Negative | 759763 - 760164 | 14629.5 |
| hypothetical protein | FAP39_03740 | Not Available | Negative | 760260 - 760538 | 10380.1 |
| nadh-quinone oxidoreductase subunit nuof | FAP39_03745 | Not Available | Negative | 760653 - 761948 | 47225.6 |
| hypothetical protein | FAP39_03750 | Not Available | Negative | 761953 - 762177 | 8159.15 |
| nadh-quinone oxidoreductase subunit e | FAP39_03755 | Not Available | Negative | 762184 - 763338 | 41405.1 |
| nadh-quinone oxidoreductase subunit d | FAP39_03760 | Not Available | Negative | 763338 - 764552 | 45605.8 |
| nadh-quinone oxidoreductase subunit c | FAP39_03765 | Not Available | Negative | 764552 - 765157 | 23232.5 |
| nadh-quinone oxidoreductase subunit b | FAP39_03770 | Not Available | Negative | 765154 - 765678 | 19317.4 |
| nadh-quinone oxidoreductase subunit a | FAP39_03775 | Not Available | Negative | 765678 - 766043 | 13708.1 |
| crotonase/enoyl-coa hydratase family protein | FAP39_03780 | Not Available | Negative | 766484 - 767263 | 27642.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
