Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit nuon | FAP39_03685 | Not Available | Negative | 749267 - 750706 | 51212.9 |
| nadh-quinone oxidoreductase subunit m | FAP39_03690 | Not Available | Negative | 750722 - 752296 | 57352.7 |
| nadh-quinone oxidoreductase subunit l | FAP39_03695 | Not Available | Negative | 752266 - 754425 | 78869.4 |
| nadh-quinone oxidoreductase subunit nuok | FAP39_03700 | Not Available | Negative | 754432 - 754737 | 10890.8 |
| nadh-quinone oxidoreductase subunit j | FAP39_03705 | Not Available | Negative | 754776 - 755384 | 21974.9 |
| carboxymuconolactone decarboxylase family protein | FAP39_03710 | Not Available | Negative | 755381 - 755788 | 14864.9 |
| nadh-quinone oxidoreductase subunit nuoi | FAP39_03715 | Not Available | Negative | 755785 - 756279 | 18796.3 |
| nadh-quinone oxidoreductase subunit nuoh | FAP39_03720 | Not Available | Negative | 756281 - 757318 | 38188.8 |
| hypothetical protein | FAP39_03725 | Not Available | Negative | 757325 - 757741 | 14750.5 |
| nadh-quinone oxidoreductase subunit g | FAP39_03730 | Not Available | Negative | 757748 - 759760 | 71758.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
