Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'/3'-nucleotidase sure | FAP39_03585 | Not Available | Positive | 729528 - 730310 | 27631.7 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | FAP39_03590 | Not Available | Positive | 730307 - 730957 | 23723.7 |
| lysm peptidoglycan-binding domain-containing protein | FAP39_03595 | Not Available | Positive | 731091 - 732290 | 41714.7 |
| atp-binding protein | FAP39_03600 | Not Available | Negative | 732417 - 733256 | 31224.3 |
| twin-arginine translocase subunit tatc | FAP39_03605 | Not Available | Negative | 733246 - 734142 | 32933.3 |
| twin-arginine translocase subunit tatb | FAP39_03610 | Not Available | Negative | 734139 - 734801 | 22578.0 |
| sec-independent protein translocase tata | FAP39_03615 | Not Available | Negative | 734820 - 735035 | 7469.11 |
| hth domain-containing protein | FAP39_03620 | Not Available | Positive | 735240 - 735902 | 24200.0 |
| hypothetical protein | FAP39_03625 | Not Available | Positive | 735968 - 736513 | 20360.8 |
| abc transporter atp-binding protein | FAP39_03630 | Not Available | Negative | 736523 - 737545 | 37212.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
