Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xdhc family protein | FAP39_03485 | Not Available | Negative | 710047 - 711036 | 34938.7 |
| hypothetical protein | FAP39_03490 | Not Available | Negative | 711187 - 711774 | 19778.8 |
| hypothetical protein | FAP39_03495 | Not Available | Negative | 711778 - 712332 | 19570.1 |
| phosphoadenosine phosphosulfate reductase | FAP39_03500 | Not Available | Positive | 712675 - 713619 | 35370.2 |
| dihydroorotase | FAP39_03505 | Not Available | Positive | 713687 - 714727 | 37080.2 |
| orotate phosphoribosyltransferase | FAP39_03510 | Not Available | Positive | 714803 - 715480 | 24817.7 |
| replicative dna helicase | FAP39_03515 | Not Available | Positive | 715746 - 717236 | 54386.9 |
| alanine racemase | FAP39_03520 | Not Available | Positive | 717296 - 718330 | 36187.5 |
| abc transporter permease | FAP39_03525 | Not Available | Positive | 718327 - 719109 | 26987.6 |
| atp-binding cassette domain-containing protein | FAP39_03530 | Not Available | Positive | 719106 - 719852 | 26561.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
