Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-trp | Not Available | Not Available | Positive | 686260 - 686335 | Not Available |
| lyse family translocator | FAP39_03385 | Not Available | Positive | 686467 - 687099 | 21750.4 |
| hypothetical protein | FAP39_03390 | Not Available | Positive | 687431 - 687907 | 17693.0 |
| hypothetical protein | FAP39_03395 | Not Available | Positive | 688069 - 688569 | 18077.4 |
| preprotein translocase subunit sece | FAP39_03400 | Not Available | Positive | 688683 - 688880 | 7197.12 |
| transcription termination/antitermination protein nusg | FAP39_03405 | Not Available | Positive | 689192 - 689725 | 20251.3 |
| 50s ribosomal protein l11 | FAP39_03410 | Not Available | Positive | 689852 - 690277 | 15030.4 |
| 50s ribosomal protein l1 | FAP39_03415 | Not Available | Positive | 690277 - 690975 | 23806.0 |
| class i sam-dependent methyltransferase | FAP39_03420 | Not Available | Positive | 691088 - 691792 | 26674.2 |
| hypothetical protein | FAP39_03425 | Not Available | Positive | 691789 - 692526 | 28130.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
