Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| moxr family atpase | FAP39_03330 | Not Available | Positive | 672812 - 673819 | 35914.6 |
| duf58 domain-containing protein | FAP39_03335 | Not Available | Positive | 673816 - 674685 | 32778.1 |
| duf4159 domain-containing protein | FAP39_03340 | Not Available | Positive | 674685 - 677444 | 99059.5 |
| hypothetical protein | FAP39_03345 | Not Available | Positive | 677441 - 679486 | 74375.6 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | FAP39_03350 | Not Available | Positive | 679642 - 681162 | 53822.8 |
| peptidase m23 | FAP39_03355 | Not Available | Positive | 681159 - 682304 | 40224.2 |
| s41 family peptidase | FAP39_03360 | Not Available | Positive | 682308 - 683639 | 47434.9 |
| rna pyrophosphohydrolase | FAP39_03365 | Not Available | Positive | 683826 - 684311 | 18513.0 |
| duf4105 domain-containing protein | FAP39_03370 | Not Available | Negative | 684329 - 685315 | 36941.1 |
| duf374 domain-containing protein | FAP39_03375 | Not Available | Negative | 685445 - 686128 | 25893.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
