Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2892 domain-containing protein | FAP39_03280 | Not Available | Negative | 661719 - 661934 | 7705.8 |
| dna mismatch repair endonuclease mutl | FAP39_03285 | Not Available | Positive | 662197 - 664056 | 66541.6 |
| dna recombination protein rmuc | FAP39_03290 | Not Available | Positive | 664053 - 665204 | 41878.5 |
| hypothetical protein | FAP39_03295 | Not Available | Negative | 665171 - 665350 | 6373.61 |
| duf3775 domain-containing protein | FAP39_03300 | Not Available | Positive | 665397 - 665723 | 11764.8 |
| saccharopine dehydrogenase | FAP39_03305 | Not Available | Negative | 665798 - 666940 | 41643.9 |
| saccharopine dehydrogenase | FAP39_03310 | Not Available | Negative | 667000 - 668064 | 37843.8 |
| dna polymerase i | FAP39_03315 | Not Available | Positive | 668393 - 671194 | 102841.0 |
| hydroxypyruvate isomerase | FAP39_03320 | Not Available | Negative | 671246 - 672004 | 27903.8 |
| duf1285 domain-containing protein | FAP39_03325 | Not Available | Negative | 672151 - 672744 | 21733.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
