Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| insulinase family protein | FAP39_03230 | Not Available | Positive | 647844 - 649184 | 49161.1 |
| insulinase family protein | FAP39_03235 | Not Available | Positive | 649181 - 650479 | 46258.0 |
| aldehyde dehydrogenase family protein | FAP39_03240 | Not Available | Negative | 650583 - 652922 | 83611.5 |
| deoxyribose-phosphate aldolase | FAP39_03245 | Not Available | Negative | 652936 - 653928 | 35717.1 |
| manganese transporter | FAP39_03250 | Not Available | Positive | 654115 - 655077 | 34923.8 |
| metal abc transporter atp-binding protein | FAP39_03255 | Not Available | Positive | 655089 - 655895 | 28952.2 |
| metal abc transporter permease | FAP39_03260 | Not Available | Positive | 655899 - 657107 | 42277.6 |
| metal abc transporter permease | FAP39_03265 | Not Available | Positive | 657104 - 658030 | 31931.9 |
| sulfate permease | FAP39_03270 | Not Available | Negative | 658082 - 659833 | 61919.5 |
| tigr01244 family phosphatase | FAP39_03275 | Not Available | Negative | 660003 - 661676 | 60080.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
