Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(55) synthase trub | FAP39_03175 | Not Available | Negative | 638014 - 638934 | 33218.6 |
| hypothetical protein | FAP39_03180 | Not Available | Negative | 639036 - 639785 | 26968.7 |
| 30s ribosome-binding factor rbfa | FAP39_03185 | Not Available | Negative | 639782 - 640186 | 15315.5 |
| 4-hydroxy-tetrahydrodipicolinate reductase | FAP39_03190 | Not Available | Positive | 640326 - 641135 | 27997.7 |
| hypothetical protein | FAP39_03195 | Not Available | Negative | 641140 - 641469 | 12727.2 |
| duf1674 domain-containing protein | FAP39_03200 | Not Available | Negative | 641485 - 641673 | 6827.95 |
| methyltransferase domain-containing protein | FAP39_03205 | Not Available | Positive | 641751 - 643019 | 44872.2 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | FAP39_03215 | Not Available | Positive | 644997 - 646586 | 55830.6 |
| signal peptidase ii | FAP39_03220 | Not Available | Positive | 646693 - 647163 | 17139.1 |
| duf3035 domain-containing protein | FAP39_03225 | Not Available | Positive | 647217 - 647726 | 18117.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
