Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| slyx family protein | FAP39_03075 | Not Available | Negative | 619101 - 619295 | 7252.64 |
| crotonase/enoyl-coa hydratase family protein | FAP39_03080 | Not Available | Positive | 619399 - 620202 | 28014.6 |
| hypothetical protein | FAP39_03085 | Not Available | Positive | 620268 - 620585 | 11620.0 |
| histidine--trna ligase | FAP39_03090 | Not Available | Positive | 620674 - 622164 | 54079.1 |
| atp phosphoribosyltransferase regulatory subunit | FAP39_03095 | Not Available | Positive | 622164 - 623249 | 39653.4 |
| atp phosphoribosyltransferase | FAP39_03100 | Not Available | Positive | 623246 - 623944 | 25017.1 |
| duf1489 family protein | FAP39_03105 | Not Available | Negative | 623941 - 624375 | 15903.1 |
| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | FAP39_03110 | Not Available | Positive | 624576 - 626858 | 83117.1 |
| rlua family pseudouridine synthase | FAP39_03115 | Not Available | Positive | 626908 - 627561 | 24360.5 |
| alpha-1,2-fucosyltransferase | FAP39_03120 | Not Available | Negative | 627558 - 628409 | 31579.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
