Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Capsid component | FAP39_15770 | Not Available | - | 3243763 - 3245154 | 47888.5 |
| abrb family transcriptional regulator | FAP39_15775 | Not Available | + | 3245235 - 3245486 | 8947.83 |
| type ii toxin-antitoxin system vapc family toxin | FAP39_15780 | Not Available | + | 3245483 - 3245881 | 14521.6 |
| Portal protein | FAP39_15785 | Not Available | - | 3245885 - 3247375 | 55261.7 |
| hypothetical protein | FAP39_15790 | Not Available | - | 3247375 - 3247584 | 7545.03 |
| Large terminase subunit | FAP39_15795 | Not Available | - | 3247588 - 3249705 | 78608.1 |
| hypothetical protein | FAP39_15800 | Not Available | - | 3249653 - 3250216 | 20378.4 |
| hypothetical protein | FAP39_15805 | Not Available | + | 3250337 - 3250534 | 7137.59 |
| Hypothetical protein | FAP39_15810 | Not Available | + | 3250531 - 3250812 | 10608.3 |
| hypothetical protein | FAP39_15815 | Not Available | + | 3250809 - 3251210 | 14634.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.