Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-glycerate dehydrogenase | FAP39_02975 | Not Available | Positive | 596029 - 597015 | 36327.3 |
| gamma-glutamyltransferase | FAP39_02980 | Not Available | Positive | 597157 - 598932 | 62260.9 |
| fad-binding protein | FAP39_02985 | Not Available | Positive | 599026 - 600432 | 49973.6 |
| cbs domain-containing protein | FAP39_02990 | Not Available | Positive | 600558 - 600992 | 15616.9 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | FAP39_02995 | Not Available | Negative | 601052 - 601861 | 28893.0 |
| pantoate--beta-alanine ligase | FAP39_03000 | Not Available | Negative | 601858 - 602703 | 30189.4 |
| hypothetical protein | FAP39_03005 | Not Available | Positive | 602875 - 603069 | 6671.06 |
| fad-dependent oxidoreductase | FAP39_03010 | Not Available | Positive | 603218 - 605725 | 93193.2 |
| hypothetical protein | FAP39_03015 | Not Available | Positive | 605849 - 606172 | 11007.1 |
| ef-hand domain-containing protein | FAP39_03020 | Not Available | Negative | 606221 - 606625 | 14696.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
