Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| long-chain fatty acid--coa ligase | FAP39_02925 | Not Available | Negative | 587318 - 588838 | 54380.9 |
| biotin transporter bioy | FAP39_02930 | Not Available | Negative | 588840 - 589376 | 18212.3 |
| energy-coupling factor transporter transmembrane protein ecft | FAP39_02935 | Not Available | Negative | 589474 - 590070 | 21263.9 |
| atp-binding cassette domain-containing protein | FAP39_02940 | Not Available | Negative | 590073 - 590747 | 25005.4 |
| trap transporter large permease | FAP39_02945 | Not Available | Negative | 590862 - 592262 | 49510.5 |
| trap transporter small permease | FAP39_02950 | Not Available | Negative | 592282 - 592902 | 22848.2 |
| c4-dicarboxylate abc transporter substrate-binding protein | FAP39_02955 | Not Available | Negative | 592975 - 593985 | 36307.0 |
| duf1127 domain-containing protein | FAP39_02960 | Not Available | Negative | 594229 - 594447 | 8232.0 |
| ribulose-phosphate 3-epimerase | FAP39_02965 | Not Available | Positive | 594716 - 595405 | 24227.3 |
| aspartyl-trna synthetase | FAP39_02970 | Not Available | Negative | 595409 - 595921 | 19092.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
