Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate c-p lyase system protein phnl | FAP39_02875 | Not Available | Positive | 576268 - 576951 | 24347.3 |
| phosphonate metabolism protein/1,5-bisphosphokinase (prpp-forming) phnn | FAP39_02880 | Not Available | Positive | 576951 - 577493 | 18943.5 |
| duf1045 domain-containing protein | FAP39_02885 | Not Available | Negative | 577475 - 578164 | 25129.2 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | FAP39_02890 | Not Available | Positive | 578214 - 579359 | 40797.6 |
| na/pi cotransporter family protein | FAP39_02895 | Not Available | Negative | 579356 - 581131 | 63705.0 |
| fad-binding protein | FAP39_02900 | Not Available | Negative | 581188 - 582564 | 49157.6 |
| (2fe-2s)-binding protein | FAP39_02905 | Not Available | Negative | 582557 - 582877 | 11540.7 |
| fad-binding oxidoreductase | FAP39_02910 | Not Available | Negative | 582864 - 583967 | 39480.1 |
| dihydroxy-acid dehydratase | FAP39_02915 | Not Available | Positive | 584231 - 586081 | 65866.8 |
| thiolase family protein | FAP39_02920 | Not Available | Negative | 586168 - 587262 | 37654.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
