Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate abc transporter, permease protein phne | FAP39_02825 | Not Available | Positive | 566856 - 568166 | 48104.2 |
| chloramphenicol acetyltransferase | FAP39_02830 | Not Available | Positive | 568211 - 568825 | 22955.1 |
| glycerophosphodiester phosphodiesterase | FAP39_02835 | Not Available | Negative | 568923 - 570137 | 44464.6 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | FAP39_02840 | Not Available | Negative | 570281 - 571462 | 42724.0 |
| phosphonate metabolism transcriptional regulator phnf | FAP39_02845 | Not Available | Negative | 571574 - 572299 | 26759.8 |
| phosphonate c-p lyase system protein phng | FAP39_02850 | Not Available | Positive | 572402 - 572845 | 15905.3 |
| phosphonate c-p lyase system protein phnh | FAP39_02855 | Not Available | Positive | 572845 - 573414 | 19900.0 |
| carbon-phosphorus lyase complex subunit phni | FAP39_02860 | Not Available | Positive | 573414 - 574520 | 40824.4 |
| carbon-phosphorus lyase | FAP39_02865 | Not Available | Positive | 574550 - 575419 | 32270.5 |
| phosphonate c-p lyase system protein phnk | FAP39_02870 | Not Available | Positive | 575416 - 576186 | 28031.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
