Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dehydratase | FAP39_02775 | Not Available | Negative | 558528 - 558944 | 14453.3 |
| maoc family dehydratase | FAP39_02780 | Not Available | Negative | 558955 - 559422 | 16842.2 |
| lipid-transfer protein | FAP39_02785 | Not Available | Negative | 559426 - 560613 | 41792.5 |
| lysr family transcriptional regulator | FAP39_02790 | Not Available | Positive | 560647 - 561636 | 35998.6 |
| glxa family transcriptional regulator | FAP39_02795 | Not Available | Positive | 561626 - 562714 | 40138.5 |
| Trna-met | Not Available | Not Available | Positive | 562819 - 562895 | Not Available |
| php domain-containing protein | FAP39_02805 | Not Available | Positive | 563138 - 564058 | 33331.2 |
| phosphonate abc transporter atp-binding protein | FAP39_02810 | Not Available | Positive | 564165 - 564959 | 29029.8 |
| phosphonate abc transporter substrate-binding protein | FAP39_02815 | Not Available | Positive | 565014 - 565916 | 31872.0 |
| phosphonate abc transporter, permease protein phne | FAP39_02820 | Not Available | Positive | 565981 - 566853 | 31580.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
