Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxygen-dependent coproporphyrinogen oxidase | FAP39_02725 | Not Available | Positive | 549225 - 550118 | 33484.3 |
| hypothetical protein | FAP39_02730 | Not Available | Negative | 550183 - 550746 | 20618.2 |
| hydroxymethylbilane synthase | FAP39_02735 | Not Available | Negative | 550942 - 551889 | 33917.7 |
| uroporphyrinogen decarboxylase | FAP39_02740 | Not Available | Positive | 552092 - 553126 | 37252.7 |
| hypothetical protein | FAP39_02745 | Not Available | Positive | 553431 - 553880 | 16253.8 |
| hypothetical protein | FAP39_02750 | Not Available | Positive | 553880 - 554362 | 17692.3 |
| l,d-transpeptidase | FAP39_02755 | Not Available | Positive | 554641 - 555417 | 28376.5 |
| coa transferase | FAP39_02760 | Not Available | Negative | 555424 - 556506 | 38071.7 |
| sdr family nad(p)-dependent oxidoreductase | FAP39_02765 | Not Available | Negative | 556521 - 557345 | 28577.1 |
| acyl-coa dehydrogenase | FAP39_02770 | Not Available | Negative | 557361 - 558509 | 42628.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
