Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_02570 | Not Available | Positive | 517737 - 518570 | 29727.0 |
| protein phosphatase | FAP39_02575 | Not Available | Positive | 518567 - 519070 | 17861.5 |
| ribosome small subunit-dependent gtpase a | FAP39_02580 | Not Available | Negative | 519101 - 520129 | 37600.9 |
| bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | FAP39_02590 | Not Available | Negative | 520465 - 522363 | 68462.4 |
| nad(+) diphosphatase | FAP39_02595 | Not Available | Positive | 522577 - 523545 | 35632.4 |
| srpbcc family protein | FAP39_02600 | Not Available | Positive | 523585 - 524052 | 17696.6 |
| prephenate dehydratase | FAP39_02605 | Not Available | Negative | 524062 - 524898 | 30167.0 |
| cytochrome c family protein | FAP39_02610 | Not Available | Positive | 525017 - 525544 | 18290.7 |
| abc transporter substrate-binding protein | FAP39_02615 | Not Available | Positive | 525804 - 527741 | 72468.5 |
| microcin c abc transporter permease yejb | FAP39_02620 | Not Available | Positive | 527749 - 528852 | 40081.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
