Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpz/atpi family protein | FAP39_02520 | Not Available | Positive | 510183 - 510524 | 12472.3 |
| f0f1 atp synthase subunit a | FAP39_02525 | Not Available | Positive | 510580 - 511287 | 25563.2 |
| f0f1 atp synthase subunit c | FAP39_02530 | Not Available | Positive | 511340 - 511564 | 7178.83 |
| f0f1 atp synthase subunit b' | FAP39_02535 | Not Available | Positive | 511647 - 512189 | 18497.9 |
| f0f1 atp synthase subunit b | FAP39_02540 | Not Available | Positive | 512194 - 512751 | 19952.2 |
| ribonuclease t | FAP39_02545 | Not Available | Negative | 512853 - 513491 | 23910.5 |
| duf1013 domain-containing protein | FAP39_02550 | Not Available | Positive | 513622 - 514380 | 27478.4 |
| recombination protein recr | FAP39_02555 | Not Available | Negative | 514534 - 515127 | 20960.1 |
| ybab/ebfc family nucleoid-associated protein | FAP39_02560 | Not Available | Negative | 515201 - 515545 | 12248.9 |
| dna polymerase iii subunit gamma/tau | FAP39_02565 | Not Available | Negative | 515685 - 517472 | 64037.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
