Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l19 | FAP39_02420 | Not Available | Negative | 495350 - 495724 | 13798.6 |
| deda family protein | FAP39_02425 | Not Available | Positive | 496155 - 496583 | 15704.5 |
| trna (guanosine(37)-n1)-methyltransferase trmd | FAP39_02430 | Not Available | Negative | 496611 - 497405 | 29581.3 |
| hypothetical protein | FAP39_02435 | Not Available | Negative | 497476 - 498297 | 31424.8 |
| 16s rrna processing protein rimm | FAP39_02440 | Not Available | Negative | 498308 - 498811 | 17675.2 |
| 5,6-dimethylbenzimidazole synthase | FAP39_02445 | Not Available | Negative | 499012 - 499641 | 23206.8 |
| 30s ribosomal protein s16 | FAP39_02450 | Not Available | Negative | 499659 - 500012 | 13048.8 |
| chorismate mutase | FAP39_02455 | Not Available | Negative | 500069 - 500365 | 11252.3 |
| gnat family n-acetyltransferase | FAP39_02460 | Not Available | Negative | 500450 - 501055 | 23040.3 |
| gnat family n-acetyltransferase | FAP39_02465 | Not Available | Negative | 501055 - 501603 | 20015.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
