Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,2-phenylacetyl-coa epoxidase subunit b | FAP39_02320 | Not Available | Negative | 478716 - 479000 | 10760.8 |
| 1,2-phenylacetyl-coa epoxidase subunit a | FAP39_02325 | Not Available | Negative | 479028 - 480020 | 37759.6 |
| 3-oxoadipyl-coa thiolase | FAP39_02330 | Not Available | Negative | 480037 - 481239 | 41043.0 |
| maleylacetoacetate isomerase | FAP39_02335 | Not Available | Negative | 481484 - 482122 | 23132.6 |
| voc family protein | FAP39_02340 | Not Available | Negative | 482210 - 482749 | 20833.9 |
| duf2783 domain-containing protein | FAP39_02345 | Not Available | Negative | 482754 - 482954 | 7011.21 |
| fad-dependent oxidoreductase | FAP39_02350 | Not Available | Negative | 482961 - 484583 | 60370.3 |
| mbl fold metallo-hydrolase | FAP39_02355 | Not Available | Negative | 484719 - 485669 | 34772.8 |
| dihydrofolate reductase | FAP39_02360 | Not Available | Negative | 485674 - 486210 | 18895.4 |
| fumarylacetoacetase | FAP39_02365 | Not Available | Negative | 486215 - 487477 | 45439.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
