Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase | FAP39_02270 | Not Available | Positive | 471285 - 472076 | 27711.2 |
| hydroxyphenylacetyl-coa thioesterase paai | FAP39_02275 | Not Available | Positive | 472073 - 472504 | 15533.3 |
| phenylacetate--coa ligase | FAP39_02280 | Not Available | Positive | 472523 - 473833 | 48143.6 |
| tetr/acrr family transcriptional regulator | FAP39_02285 | Not Available | Positive | 473837 - 474433 | 22476.8 |
| pace efflux transporter | FAP39_02290 | Not Available | Negative | 474419 - 474889 | 17861.1 |
| marr family transcriptional regulator | FAP39_02295 | Not Available | Positive | 474966 - 475460 | 18447.3 |
| phenylacetic acid catabolic | FAP39_02300 | Not Available | Negative | 475512 - 476270 | 27237.6 |
| phenylacetate-coa oxygenase/reductase subunit paak | FAP39_02305 | Not Available | Negative | 476286 - 477359 | 38765.0 |
| phenylacetate-coa oxygenase subunit paaj | FAP39_02310 | Not Available | Negative | 477482 - 477955 | 17540.1 |
| phenylacetate-coa oxygenase subunit paai | FAP39_02315 | Not Available | Negative | 477949 - 478716 | 28122.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
