Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | FAP39_02220 | Not Available | Negative | 460104 - 460826 | 26160.9 |
| abc transporter atp-binding protein | FAP39_02225 | Not Available | Negative | 460819 - 461583 | 27679.4 |
| abc transporter permease | FAP39_02230 | Not Available | Negative | 461658 - 462833 | 42395.2 |
| homoprotocatechuate degradation operon regulator hpar | FAP39_02235 | Not Available | Positive | 463136 - 463576 | 16447.0 |
| paax family transcriptional regulator | FAP39_02240 | Not Available | Negative | 463589 - 464410 | 30246.0 |
| phenylacetic acid degradation bifunctional protein paaz | FAP39_02245 | Not Available | Negative | 464536 - 466566 | 72850.9 |
| cytochrome p450 | FAP39_02250 | Not Available | Negative | 466745 - 467932 | 44092.6 |
| trap transporter large permease | FAP39_02255 | Not Available | Negative | 467932 - 469284 | 47417.7 |
| trap transporter small permease | FAP39_02260 | Not Available | Negative | 469281 - 469787 | 18948.8 |
| trap transporter substrate-binding protein | FAP39_02265 | Not Available | Negative | 469859 - 470881 | 35507.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
