Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| agmatinase | FAP39_02170 | Not Available | Negative | 449405 - 450367 | 34621.1 |
| nlpc/p60 family protein | FAP39_02175 | Not Available | Negative | 450360 - 451262 | 33024.1 |
| leucyl aminopeptidase family protein | FAP39_02180 | Not Available | Negative | 451259 - 452650 | 49043.6 |
| hypothetical protein | FAP39_02185 | Not Available | Negative | 452718 - 453098 | 14219.2 |
| carbonic anhydrase | FAP39_02190 | Not Available | Positive | 453245 - 453895 | 23917.3 |
| aspartate-semialdehyde dehydrogenase | FAP39_02195 | Not Available | Negative | 454395 - 455417 | 37195.4 |
| glycosyltransferase family 4 protein | FAP39_02200 | Not Available | Negative | 455535 - 456557 | 37235.5 |
| mfs transporter | FAP39_02205 | Not Available | Negative | 456566 - 457738 | 41262.5 |
| branched-chain amino acid abc transporter permease | FAP39_02210 | Not Available | Negative | 457945 - 459009 | 38062.1 |
| branched-chain amino acid abc transporter permease | FAP39_02215 | Not Available | Negative | 459011 - 460042 | 36552.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
