Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | FAP39_02120 | Not Available | Negative | 441218 - 442186 | 34273.1 |
| yaii/yqxd family protein | FAP39_02125 | Not Available | Negative | 442252 - 442704 | 16157.5 |
| hypothetical protein | FAP39_02130 | Not Available | Negative | 442723 - 443718 | 37389.9 |
| s-formylglutathione hydrolase | FAP39_02135 | Not Available | Negative | 443642 - 444472 | 30323.4 |
| aec family transporter | FAP39_02140 | Not Available | Negative | 444566 - 445495 | 32827.3 |
| rubrerythrin family protein | FAP39_02145 | Not Available | Negative | 445592 - 446566 | 35556.5 |
| tetr/acrr family transcriptional regulator | FAP39_02150 | Not Available | Positive | 446688 - 447305 | 22783.5 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | FAP39_02155 | Not Available | Negative | 447314 - 448426 | 39237.1 |
| hypothetical protein | FAP39_02160 | Not Available | Positive | 448557 - 448820 | 9234.08 |
| duf2794 domain-containing protein | FAP39_02165 | Not Available | Positive | 449025 - 449372 | 12976.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
