Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | FAP39_02070 | Not Available | Positive | 431627 - 432376 | 26017.1 |
| hypothetical protein | FAP39_02075 | Not Available | Negative | 432377 - 432757 | 13900.7 |
| hypothetical protein | FAP39_02080 | Not Available | Negative | 432770 - 433531 | 29217.3 |
| cpbp family intramembrane metalloprotease | FAP39_02085 | Not Available | Positive | 433744 - 434625 | 32322.7 |
| acetyl-coa carboxylase carboxyltransferase subunit beta | FAP39_02090 | Not Available | Positive | 434702 - 435679 | 35698.5 |
| bifunctional folylpolyglutamate synthase/dihydrofolate synthase | FAP39_02095 | Not Available | Positive | 435715 - 436953 | 43626.7 |
| cell division protein zape | FAP39_02100 | Not Available | Negative | 437149 - 438216 | 39843.8 |
| mfs transporter | FAP39_02105 | Not Available | Positive | 438386 - 439624 | 43766.2 |
| ornithine cyclodeaminase | FAP39_02110 | Not Available | Negative | 439658 - 440569 | 33132.3 |
| had family phosphatase | FAP39_02115 | Not Available | Negative | 440566 - 441186 | 23496.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
