Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator/antitoxin maze | FAP39_09750 | Not Available | + | 1975495 - 1975719 | 7976.58 |
| Toxin protein | FAP39_09755 | Not Available | + | 1975716 - 1976108 | 14221.1 |
| Dna methylase | FAP39_09760 | Not Available | + | 1976539 - 1977792 | 45872.7 |
| vanz family protein | FAP39_09765 | Not Available | + | 1977894 - 1978289 | 14248.9 |
| cia30 family protein | FAP39_09770 | Not Available | - | 1978378 - 1978947 | 20782.3 |
| Hypothetical protein | FAP39_09775 | Not Available | + | 1979012 - 1979233 | 8083.04 |
| duf3489 domain-containing protein | FAP39_09780 | Not Available | - | 1979339 - 1979599 | 9485.52 |
| hypothetical protein | FAP39_09785 | Not Available | - | 1979694 - 1979912 | 7813.3 |
| Hypothetical protein | FAP39_09790 | Not Available | - | 1979918 - 1980187 | 10043.7 |
| Dna binding motif containing protein | FAP39_09795 | Not Available | + | 1980317 - 1980913 | 21586.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.