Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | FAP39_02020 | Not Available | Positive | 421916 - 422485 | 20473.4 |
| type i methionyl aminopeptidase | FAP39_02025 | Not Available | Negative | 422519 - 423325 | 29165.9 |
| dna/rna nuclease sfsa | FAP39_02030 | Not Available | Negative | 423476 - 424183 | 25970.2 |
| competence/damage-inducible protein a | FAP39_02035 | Not Available | Positive | 424230 - 424949 | 24940.8 |
| gnat family n-acetyltransferase | FAP39_02040 | Not Available | Positive | 424946 - 425677 | 26319.6 |
| alkylhydroperoxidase | FAP39_02045 | Not Available | Positive | 425689 - 426261 | 21428.7 |
| ompa family protein | FAP39_02050 | Not Available | Positive | 426258 - 427208 | 33902.4 |
| lysr family transcriptional regulator | FAP39_02055 | Not Available | Negative | 427298 - 428203 | 33026.3 |
| aec family transporter | FAP39_02060 | Not Available | Negative | 428376 - 429287 | 31295.3 |
| nadph-dependent 2,4-dienoyl-coa reductase | FAP39_02065 | Not Available | Negative | 429422 - 431449 | 72463.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
