Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p-ii family nitrogen regulator | FAP39_01970 | Not Available | Negative | 412861 - 413199 | 12243.1 |
| glycosyl transferase | FAP39_01975 | Not Available | Positive | 413458 - 415635 | 78185.0 |
| abc transporter substrate-binding protein | FAP39_01980 | Not Available | Negative | 415706 - 416299 | 21855.6 |
| vacj family lipoprotein | FAP39_01985 | Not Available | Negative | 416301 - 417053 | 27610.1 |
| rida family protein | FAP39_01990 | Not Available | Positive | 417289 - 417750 | 15601.9 |
| phosphodiesterase | FAP39_01995 | Not Available | Positive | 417747 - 418514 | 27797.2 |
| n-acetyltransferase | FAP39_02000 | Not Available | Positive | 418587 - 419774 | 44513.3 |
| 4a-hydroxytetrahydrobiopterin dehydratase | FAP39_02005 | Not Available | Positive | 419771 - 420073 | 11222.3 |
| peroxiredoxin | FAP39_02010 | Not Available | Negative | 420134 - 420622 | 17130.6 |
| nad(p)/fad-dependent oxidoreductase | FAP39_02015 | Not Available | Positive | 420711 - 421919 | 42982.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
