Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional repressor | FAP39_01920 | Not Available | Negative | 402536 - 403012 | 17379.8 |
| zinc transporter | FAP39_01925 | Not Available | Positive | 403123 - 404070 | 34309.0 |
| abc transporter substrate-binding protein | FAP39_01930 | Not Available | Negative | 404123 - 405784 | 61064.6 |
| glycosyltransferase family 2 protein | FAP39_01935 | Not Available | Positive | 405959 - 407053 | 40717.8 |
| laci family dna-binding transcriptional regulator | FAP39_01940 | Not Available | Negative | 407066 - 408085 | 36840.6 |
| hypothetical protein | FAP39_01945 | Not Available | Positive | 408492 - 409298 | 29066.0 |
| hlyd family secretion protein | FAP39_01950 | Not Available | Negative | 409429 - 410451 | 36697.4 |
| duf3302 domain-containing protein | FAP39_01955 | Not Available | Negative | 410552 - 410809 | 9223.48 |
| hemin uptake protein hemp | FAP39_01960 | Not Available | Negative | 411054 - 411212 | 5799.3 |
| ammonium transporter | FAP39_01965 | Not Available | Negative | 411528 - 412835 | 45701.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
