Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide export protein | FAP39_01820 | Not Available | Negative | 383684 - 384772 | 38530.6 |
| capsular biosynthesis protein | FAP39_01825 | Not Available | Negative | 384923 - 386218 | 49540.5 |
| riboflavin synthase | FAP39_01830 | Not Available | Positive | 386350 - 386937 | 20963.8 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | FAP39_01835 | Not Available | Positive | 387071 - 388207 | 40951.9 |
| 6,7-dimethyl-8-ribityllumazine synthase | FAP39_01840 | Not Available | Positive | 388211 - 388762 | 19444.4 |
| transcription antitermination factor nusb | FAP39_01845 | Not Available | Positive | 388759 - 389226 | 17449.8 |
| amidohydrolase | FAP39_01850 | Not Available | Negative | 389281 - 390852 | 57089.5 |
| hypothetical protein | FAP39_01855 | Not Available | Positive | 391010 - 391339 | 11881.0 |
| hypothetical protein | FAP39_01860 | Not Available | Negative | 391687 - 391875 | 6719.84 |
| Trna-his | Not Available | Not Available | Positive | 392194 - 392270 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
