Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate--tetrahydrofolate ligase | FAP39_01510 | Not Available | Positive | 326235 - 327911 | 59774.8 |
| chorismate mutase | FAP39_01515 | Not Available | Positive | 327967 - 328272 | 11602.0 |
| bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase | FAP39_01520 | Not Available | Positive | 328284 - 329177 | 31150.0 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | FAP39_01525 | Not Available | Positive | 329191 - 330093 | 31349.0 |
| paai family thioesterase | FAP39_01530 | Not Available | Negative | 330188 - 330619 | 15160.4 |
| lyttr family transcriptional regulator | FAP39_01535 | Not Available | Positive | 330692 - 331558 | 31627.1 |
| metallophosphoesterase | FAP39_01540 | Not Available | Negative | 331555 - 332229 | 24422.2 |
| helix-turn-helix transcriptional regulator | FAP39_01545 | Not Available | Negative | 332348 - 332641 | 10599.9 |
| mandelate racemase/muconate lactonizing enzyme family protein | FAP39_01550 | Not Available | Negative | 332736 - 333968 | 44460.1 |
| hypothetical protein | FAP39_01555 | Not Available | Negative | 334056 - 335228 | 43891.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
