Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fmn-binding protein | FAP39_15640 | Not Available | Negative | 3221258 - 3222070 | 29119.5 |
| nitrite reductase | FAP39_15645 | Not Available | Positive | 3222182 - 3223936 | 64256.1 |
| uroporphyrinogen-iii c-methyltransferase | FAP39_15650 | Not Available | Positive | 3224013 - 3224804 | 27891.9 |
| cytochrome c | FAP39_15655 | Not Available | Positive | 3224797 - 3225099 | 10788.0 |
| protein nirf | FAP39_15660 | Not Available | Positive | 3225096 - 3226241 | 41324.2 |
| lrp/asnc family transcriptional regulator | FAP39_15665 | Not Available | Positive | 3226245 - 3227243 | 36776.5 |
| lrp/asnc family transcriptional regulator | FAP39_15670 | Not Available | Positive | 3227240 - 3227695 | 17009.3 |
| lrp/asnc family transcriptional regulator | FAP39_15675 | Not Available | Positive | 3227692 - 3228177 | 17885.7 |
| heme d1 biosynthesis radical sam protein nirj | FAP39_15680 | Not Available | Positive | 3228182 - 3229396 | 44805.2 |
| cytochrome c oxidase cbb3 | FAP39_15685 | Not Available | Positive | 3229467 - 3230987 | 56401.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
