Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucine--trna ligase | FAP39_15535 | Not Available | Negative | 3199547 - 3202123 | 96373.2 |
| glycosyltransferase | FAP39_15540 | Not Available | Positive | 3202297 - 3203556 | 47243.2 |
| duf3576 domain-containing protein | FAP39_15545 | Not Available | Negative | 3203575 - 3204087 | 18114.7 |
| urease accessory protein ured | FAP39_15550 | Not Available | Positive | 3204747 - 3205520 | 27711.7 |
| urease subunit gamma | FAP39_15555 | Not Available | Positive | 3205522 - 3205824 | 10872.3 |
| urease subunit beta | FAP39_15560 | Not Available | Positive | 3206000 - 3206305 | 10972.2 |
| urease subunit alpha | FAP39_15565 | Not Available | Positive | 3206371 - 3208080 | 60974.7 |
| urease accessory protein uree | FAP39_15570 | Not Available | Positive | 3208090 - 3208542 | 16542.8 |
| urease accessory protein uref | FAP39_15575 | Not Available | Positive | 3208526 - 3209170 | 23072.5 |
| fad:protein fmn transferase | FAP39_15585 | Not Available | Negative | 3209918 - 3210850 | 32975.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
