Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3'(2'),5'-bisphosphate nucleotidase cysq | FAP39_15485 | Not Available | Negative | 3189634 - 3190416 | 28253.2 |
| tldd/pmba family protein | FAP39_15490 | Not Available | Negative | 3190403 - 3191749 | 46912.3 |
| duf2125 domain-containing protein | FAP39_15495 | Not Available | Negative | 3191868 - 3193358 | 52726.7 |
| sdr family oxidoreductase | FAP39_15500 | Not Available | Positive | 3193490 - 3194242 | 26490.7 |
| enoyl-coa hydratase/isomerase family protein | FAP39_15505 | Not Available | Positive | 3194239 - 3194850 | 21141.9 |
| mechanosensitive ion channel | FAP39_15510 | Not Available | Positive | 3194924 - 3196243 | 48392.2 |
| tigr03862 family flavoprotein | FAP39_15515 | Not Available | Positive | 3196240 - 3197406 | 41298.1 |
| glutathione s-transferase family protein | FAP39_15520 | Not Available | Negative | 3197407 - 3197991 | 22076.4 |
| dna polymerase iii subunit delta | FAP39_15525 | Not Available | Negative | 3198050 - 3199075 | 37060.5 |
| hypothetical protein | FAP39_15530 | Not Available | Negative | 3199072 - 3199560 | 17229.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
