Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific dna-methyltransferase | FAP39_15435 | Not Available | Positive | 3180038 - 3181153 | 41899.1 |
| adenylate/guanylate cyclase domain-containing protein | FAP39_15440 | Not Available | Positive | 3181303 - 3182700 | 52340.7 |
| alkane 1-monooxygenase | FAP39_15445 | Not Available | Negative | 3182697 - 3183830 | 43750.1 |
| a/g-specific adenine glycosylase | FAP39_15450 | Not Available | Negative | 3183896 - 3184948 | 38902.8 |
| duf721 domain-containing protein | FAP39_15455 | Not Available | Positive | 3185036 - 3185533 | 18170.9 |
| dsba family protein | FAP39_15460 | Not Available | Positive | 3185547 - 3186233 | 24423.2 |
| tetraacyldisaccharide 4'-kinase | FAP39_15465 | Not Available | Negative | 3186256 - 3187263 | 36026.1 |
| 3-deoxy-d-manno-octulosonic acid transferase | FAP39_15470 | Not Available | Negative | 3187263 - 3188480 | 43729.3 |
| duf4170 domain-containing protein | FAP39_15475 | Not Available | Negative | 3188490 - 3188732 | 9197.88 |
| glutamine amidotransferase | FAP39_15480 | Not Available | Positive | 3188869 - 3189612 | 27368.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
