Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycii family protein | FAP39_15385 | Not Available | Negative | 3171498 - 3171770 | 9789.79 |
| nad(p)-dependent glycerol-3-phosphate dehydrogenase | FAP39_15390 | Not Available | Negative | 3171773 - 3172732 | 33356.6 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | FAP39_15395 | Not Available | Negative | 3172729 - 3173826 | 37822.9 |
| uroporphyrinogen-iii synthase | FAP39_15400 | Not Available | Positive | 3173885 - 3174622 | 25739.1 |
| hypothetical protein | FAP39_15405 | Not Available | Positive | 3174675 - 3175961 | 45078.1 |
| heme biosynthesis protein hemy | FAP39_15410 | Not Available | Positive | 3175973 - 3177502 | 55129.8 |
| hypothetical protein | FAP39_15415 | Not Available | Negative | 3177599 - 3178303 | 25452.6 |
| hypothetical protein | FAP39_15420 | Not Available | Negative | 3178275 - 3178565 | 10373.5 |
| hypothetical protein | FAP39_15425 | Not Available | Positive | 3178738 - 3179193 | 17222.1 |
| ribonuclease hii | FAP39_15430 | Not Available | Positive | 3179314 - 3179931 | 22186.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
